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Table Card RUSMARC
Title: Molecular machines: a materials science approach
Creators: Zocchi Giovanni.
Imprint: Princeton: Princeton University Press, 2018
Collection: Электронные книги зарубежных издательств; Общая коллекция
Subjects: Molecular machinery.; Nanoscience.; Nanotechnology.; TECHNOLOGY & ENGINEERING / Engineering (General); TECHNOLOGY & ENGINEERING / Reference; EBSCO eBooks
Document type: Other
File type: PDF
Language: English
Rights: Доступ по паролю из сети Интернет (чтение, печать, копирование)
Record key: on1036781636

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Table of Contents

  • Cover
  • Title
  • Copyright
  • CONTENTS
  • Preface
  • Acknowledgments
  • Dedication
  • 1 Brownian Motion
    • 1.1 Random Walk
    • 1.2 Polymer as a Simple Random Walk
    • 1.3 Direct Calculation of p(R)
    • 1.4 The Langevin Approach
    • 1.5 Correlation Functions
    • 1.6 Barrier Crossing
    • 1.7 What is Equilibrium?
  • 2 Statics of DNA Deformations
    • 2.1 Introduction
    • 2.2 DNA Melting
    • 2.3 Zipper Model
    • 2.4 Experimental Melting Curves
    • 2.5 Base Pairing and Base Stacking as Separate Degrees of Freedom
    • 2.6 Hamiltonian Formulation of the Zipper Model
    • 2.7 2 × 2Model: Cooperativity from Local Rules
    • 2.8 Nearest Neighbor Model
    • 2.9 Connection to Nonlinear Dynamics
    • 2.10 Linear and Nonlinear Elasticity of DNA
    • 2.11 Bending Modulus and Persistence Length
    • 2.12 Measurements of DNA Elasticity: Long Molecules
    • 2.13 Measurements of DNA Elasticity: Short Molecules
    • 2.14 The Euler Instability
    • 2.15 The DNA Yield Transition
  • 3 Kinematics of Enzyme Action
    • 3.1 Introduction
    • 3.2 Michaelis–Menten Kinetics
    • 3.3 The Method of the DNA Springs
    • 3.4 Force and Elastic Energy in the Enzyme—DNA Chimeras
    • 3.5 Injection of Elastic Energy vs. Activity Modulation
    • 3.6 Connection to Nonlinear Dynamics: Two Coupled Nonlinear Springs
  • 4 Dynamics of Enzyme Action
    • 4.1 Introduction
    • 4.2 Enzymes are Viscoelastic
    • 4.3 Nonlinearity of the Enzyme’s Mechanics
    • 4.4 Timescales
    • 4.5 Enzymatic Cycle and Viscoelasticity: Motors
    • 4.6 Internal Dissipation
    • 4.7 Origin of the Restoring Force g
    • 4.8 Models Based on Chemical Kinetics (Fisher and Kolomeisky, 1999)
    • 4.9 Different Levels of Microscopic Description
    • 4.10 Connection to Information Flow
    • 4.11 Normal Mode Analysis
    • 4.12 Many States of the Folded Protein: Spectroscopy
    • 4.13 Interesting Topics in Nonequilibrium Thermodynamics Relating to Enzyme Dynamics
  • Bibliography
    • Chapter 1: Brownian Motion
    • Chapter 2: Statics of DNA Deformations
    • Chapter 3: Kinematics of Enzyme Action
    • Chapter 4: Dynamics of Enzyme Action
  • Index

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